PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG116200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 216aa    MW: 23126.8 Da    PI: 4.4338
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG116200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.88.6e-179417718100
                NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprde 100
                          + +lP+ rik+i+++d d+k++++ea  l++ a elf+  l+  ++  a    rrt++ + + aa  ++  + dfl+d  p +e
  Pavir.5NG116200.1.p  94 RPTLPVGRIKRIMRVDRDIKKVTSEATLLIAAATELFLGSLASGAYTAAARRGRRTVRAAHVRAAArAHRPTADFLLDCLPAEE 177
                          4579**********************************************************88762567799*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-1794174IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.9E-2095158IPR009072Histone-fold
PfamPF008081.8E-1596158IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MATAAAEPTV AMEEPLGKED ERIDEPAEAM EQIAEEREQA GEPAEAMGQI EEEQVEPGDP  60
MEQVEEQHVE AAEPMEQVGV EQEEAEAEEG TSLRPTLPVG RIKRIMRVDR DIKKVTSEAT  120
LLIAAATELF LGSLASGAYT AAARRGRRTV RAAHVRAAAR AHRPTADFLL DCLPAEEEAP  180
RSRPAAGSAG GGGGREAKPL PRGTRRIDAL FQKVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG116200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269581e-114KJ726958.1 Zea mays clone pUT3656 CCAAT-HAP5 transcription factor (CA5P15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819164.17e-81nuclear transcription factor Y subunit C-6 isoform X1
TrEMBLA0A2S3HYE02e-79A0A2S3HYE0_9POAL; Uncharacterized protein
STRINGPavir.J29091.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-08nuclear factor Y, subunit C13