PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG119700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 133aa    MW: 14969.2 Da    PI: 10.2785
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG119700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.5e-161150241
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                         rie+   rqv fsk r+g++KKA+EL  LCdaeva++ f 
  Pavir.5NG119700.1.p 11 RIEDRVSRQVLFSKHRAGLFKKAFELWLLCDAEVALVTFP 50
                         8************************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-14161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.423253IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-16424IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-18555IPR002100Transcription factor, MADS-box
PfamPF003193.1E-171150IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-162439IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-163960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MPRHGRVELR RIEDRVSRQV LFSKHRAGLF KKAFELWLLC DAEVALVTFP ATSSSSYLLP  60
TTALQHHHAK THLELELHNS RHHLAASISP EKSTFTTMRQ PHFMSPPPSP PSSDTMRKSM  120
CGEISRDTLS LS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG119700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848197e-45KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7DR225e-22A0A2T7DR22_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.15e-18MIKC_MADS family protein