PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG137800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 175aa    MW: 19991.8 Da    PI: 8.4488
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG137800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.65.5e-2044121287
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                           Yn+YA +vGFs+rks+sk + ++++i+++  vCs+e +r++++++       +  trt+C+a+++ + +k+g w v+k++l+HnH
  Pavir.5NG137800.1.p  44 IYNTYADKVGFSIRKSHSKLR-EDKTIYQKYIVCSNEAYRRNKSSH-------KDITRTSCEARVQFNISKEGIWTVQKVVLDHNH 121
                          7**************998776.8888**************998777.......99******************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1744121IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAGEADPDIP TTAAVMPVVH EIGQDLIVPE VGMAFDPEEK ACEIYNTYAD KVGFSIRKSH  60
SKLREDKTIY QKYIVCSNEA YRRNKSSHKD ITRTSCEARV QFNISKEGIW TVQKVVLDHN  120
HYPASPNKLH KLKSQRRVTE ADRMLISQIR EAEIKPAQVY EFMKEFYGGA LWRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG137800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699174.17e-79protein FAR1-RELATED SEQUENCE 5-like
TrEMBLT1MNQ51e-71T1MNQ5_TRIUA; Uncharacterized protein
STRINGSb10g007195.11e-85(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1212587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-20FAR1-related sequence 5