PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG146700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 299aa MW: 30917.5 Da PI: 6.7409

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG146700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	7.8e-09	216	257	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L++l+P+ +K++ +++LekA+ Y+k Lq Pavir.5NG146700.1.p 216 AKVRRERIAEKLKVLQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 257 589***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.322	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-12	208	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-12	209	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.50E-11	209	261	No hit	No description
SMART	SM00353	2.5E-10	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-6	217	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAQASKRSAM QQPQLRPVMY GDEPSSMSLE LFGYHGGVVV DGDEGEGGSA AAALSLQLAF 60 DDDSFKHGAA SAGGDYYSSW AGYGGSGASS SSSSSVLSFE QAGSGGHHHH LGDDGCALWM 120 DVAAAGMVEH PPPHQHGSAC RFGLVSPGSS ADDDAGGLHI QGLGSDQPPA KATNKRARPD 180 GEVQAAAAAK KQCGGGRKSK AKAAPAPTKD PQSVAAKVRR ERIAEKLKVL QDLVPNGTKV 240 DLVTMLEKAI TYVKFLQLQV KVLAADEFWP AQGGKAPDLS QVKDALDAIL SSQQYPHK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG146700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819067.1	1e-161	transcription factor bHLH83-like
Swissprot	Q9FJ00	9e-49	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A2S3HX40	1e-160	A0A2S3HX40_9POAL; Uncharacterized protein
STRING	Pavir.Eb00817.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	6e-45	ROOT HAIR DEFECTIVE6

Link Out ? help Back to Top
Phytozome	Pavir.5NG146700.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]