PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG151500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 240aa    MW: 24797.3 Da    PI: 10.0817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG151500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000143579641
                         HHHHHHHHHHHHHHHHHHHCTSCCC............TTS-STCH CS
                  HLH  6 nerErrRRdriNsafeeLrellPkas.........kapskKlsKa 41
                         + +E++RR +++    +L +l+P+a          +a++  ++Ka
  Pavir.5NG151500.1.p 35 KDVEKNRRLHMKGLCLKLSSLIPPAArrasllseaAASASNPNKA 79
                         689*********************654777777754555556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577130No hitNo description
Gene3DG3DSA:4.10.280.102.8E-53357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-5104138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MKSRRQSSGG SSGGATAAGV GNTHSSGGGC KLERKDVEKN RRLHMKGLCL KLSSLIPPAA  60
RRASLLSEAA ASASNPNKAW TMELSDALSA VCPSRTGPAS IQSSQAPATA AAAVPVTFSA  120
AAYIKQLKER VDALKRRKEG GGGREGGAAA GAVRMPVVEV RCQDGATLDV VLISEAGRPF  180
KLHEVITALE EEGAEVVSAS FSVVGDKIFY TIHSQALSPR IGLDAARVSE RLHDLLLLV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.3221e-159callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG151500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388187e-68BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds.
GenBankKJ7268687e-68KJ726868.1 Zea mays clone pUT3409 bHLH transcription factor (bHLH76) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819704.11e-103transcription factor bHLH168-like
TrEMBLA0A2S3HXR11e-102A0A2S3HXR1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DQ291e-102A0A2T7DQ29_9POAL; Uncharacterized protein
STRINGPavir.Eb00837.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.11e-13bHLH family protein