PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG151800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 229aa    MW: 24411.6 Da    PI: 9.5707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG151800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-094289654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                         +e+Er+RR++++s   +L +l+Pk +   +s+  ++    L  A  YIk+L
  Pavir.5NG151800.1.p 42 KEIERKRRQQMKSLCVKLASLIPKeD---YSRDaMTQLGSLDVAAAYIKKL 89
                         79**********************77...88888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-1127101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.1373689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1241103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-44193No hitNo description
SMARTSM003537.4E-64295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-74289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEMQGAKKSR SSSDTATAGK RSSMRSNNSG SSGTTTPAVE RKEIERKRRQ QMKSLCVKLA  60
SLIPKEDYSR DAMTQLGSLD VAAAYIKKLK ERVDELQQKR SSAQLMAAGT SGGGRGGSVA  120
STSMATAAAS GGARSEEDAA EEAAEAPVVE VVHHHDGSSL DVVLISSVER PFKLHEVVTV  180
LEEEGAEIIN ANLSVASRKI FHTIHCRAFS PRIGIEVSRV SERLRAMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG151800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818432.11e-110transcription factor bHLH162-like
TrEMBLA0A2S3HX221e-108A0A2S3HX22_9POAL; Uncharacterized protein
STRINGPavir.J28250.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.13e-11bHLH family protein