PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG156300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 409aa    MW: 42688.6 Da    PI: 5.1647
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG156300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57395.65.1e-3088187297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqk 87 
                          lfqrlw++e e+++L+ ++df+a++g+   +++ d+  fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g  ++f+++h+  
  Pavir.5NG156300.1.p  88 LFQRLWTDEEELLILRSFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCAARvAAQGAAFAFRSAHEGA 177
                          79************************99877778*************************************998899************* PP

               DUF573  88 ifelskkiWg 97 
                          i+++++ iW+
  Pavir.5NG156300.1.p 178 IYDVARHIWR 187
                          *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-2689186IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAEAADHHPL AAAASSSASD DDEGTDTDAS NSDLANHRDP PPLTDATSAP PPDAATATAT  60
APEPTGAVPP PPQAQGAGAG SAEDSRRLFQ RLWTDEEELL ILRSFLDFTA RRGTTFASHQ  120
YDTGPFYEEI RRRLSFDFTK SQLIEKLRRL KKKYRVCAAR VAAQGAAFAF RSAHEGAIYD  180
VARHIWRPAF RRGEGAAAAG DVSDEDDINP AAAALPNAME NGGGGGGSAS APTPRGRGGR  240
RVRRRTAQEL EAPALPSTSA LMLNDVVQEP LVVSVVNLAP AFAPPHPAQV PIVSPVAATP  300
SSMPANGGGG TEEVVRTVLT PLLREFISSV AIAGQAGLGL GFGMGFGGIG GFDILGPGSG  360
AAGPNPGMPG DEKWKQQQIL ELEVYLKRIE LVREHVTAAL QELRSSEG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.419111e-129leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG156300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817348.10.0probable transcription factor At3g04930
TrEMBLA0A2T7DPJ70.0A0A2T7DPJ7_9POAL; Uncharacterized protein
STRINGSi005179m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-26DNA-binding storekeeper protein-related transcriptional regulator