PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG170800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 763aa    MW: 87067.2 Da    PI: 8.0087
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG170800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.35.3e-2398194188
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                          ++Yn+YA+++GFs+r+++s++sk+ +e tk+ +vC+k g +++ek +          +++ r+  ++rt+C a++ v+k++ g+we+ ++
  Pavir.5NG170800.1.p  98 DYYNSYARHTGFSIRIDTSRESKKANEKTKHIYVCQKAGVNKKEKVAddgpmtekkIVRQTRRDYVDRTHCPARMIVRKTSPGHWEIVNF 187
                          69*****************************************999999**998876777888999************************ PP

                 FAR1  82 eleHnHe 88 
                          e eHnHe
  Pavir.5NG170800.1.p 188 EREHNHE 194
                          ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-2198194IPR004330FAR1 DNA binding domain
PfamPF105513.3E-30318412IPR018289MULE transposase domain
PROSITE profilePS509669.742606642IPR007527Zinc finger, SWIM-type
SMARTSM005753.8E-4617644IPR006564Zinc finger, PMZ-type
PfamPF044341.8E-5618641IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MCVAGGAGAH VSSSNLTLPV ISNETLHLPS NSAPPELATQ QLSNSASKVL PAESGGVTVP  60
TAETTVDGVD VEDGVEVLST PQEPFVGMSF NTSDAAKDYY NSYARHTGFS IRIDTSRESK  120
KANEKTKHIY VCQKAGVNKK EKVADDGPMT EKKIVRQTRR DYVDRTHCPA RMIVRKTSPG  180
HWEIVNFERE HNHERLRKFL LTKYLKSHRD IPAEEKEFIK LLHEYCITTT RAYQIIAELY  240
GGIENCPYTE VDAKNLRVEY RAEYRGKDVK ATLEYFEELK KEDPKFYYSY TLNEFDRVEN  300
LFWVDGAARR TYELYSDCLS FDTTYLTNAY NMPCAPFIGI DRNGITIQLG CGFLRNEKTE  360
GFVWLFTEFK KAMGGKDPAN IIIDQDIAMK AAIAEVFVSL VHRNCRWHIM ENARKTMGAF  420
LDSMGDGKQE LADDFKDCID NSFTPAEFEQ KWQAFLDKYE LNNDERFQHL YDMRHCWIPA  480
YFMHCFFPFL QTTARSEGFN AVLKRYVNPK NSILNFVQQY KKIQQRIFSK QDLQEAAIAT  540
KVPRYLTGHP MEHQMKKVYT KRLFNVFQHE LQLSSSYYVV RVEGDGLIDV VPYRRCPDLL  600
YGTRTFRVTS SRVEGLYSCT CCKFERDGLL CCHILKVFDA LAVREVPDRY ILPRWSVEPV  660
VDSGVEVAAN EPLQEALITD HGKHVIRSHV AGAEIGDPPI TKKQGRPWSK RYKIGLRLLP  720
KKKPPCGYCG STEHTTSTCP AKPARKQTKE LSDKSLNEVA AA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.307531e-101callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG170800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SLU80.0A0A3L6SLU8_PANMI; Uncharacterized protein
STRINGPavir.Ia02474.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-95FAR1-related sequence 5