PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG202900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 299aa MW: 30965.7 Da PI: 9.7676

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG202900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.2	9.1e-06	196	236	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P +++ a++L +A Y+k L Pavir.5NG202900.1.p 196 ARLRRERVSERLRVLQRLVPGG-----SRMDTASMLDEAASYLKFL 236 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.215	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-12	193	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-11	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.58E-10	193	241	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-9	193	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGLDTADVLP SVVAGAAEDS LLDPFVYAPN VVAVAEEPAQ TPASNTAFSG YSGSTTGGGG 60 NGNISSGESN TCGSGGGYDT DVASPCAVSR TALLQTTAVV PPSKRKLGNE PPRRRRRRPA 120 SRSRGGASTS MPQEGPPPAG YEPDSEAIAQ VKEMIYRAAA MRPVHQLVCG AAEPPSQTRP 180 RRKNVRISSD PQTVAARLRR ERVSERLRVL QRLVPGGSRM DTASMLDEAA SYLKFLKSQL 240 KALERANPSN GSLLQSYTGG LGGGATSAGT VLAFGRESAI GGYVKSNRDI STCGVSDI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	117	KRKLGNEPPRRRRRR
2	111	118	PRRRRRRP
3	112	117	RRRRRR
4	178	182	RPRRK
5	196	201	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG202900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065889	1e-130	BT065889.1 Zea mays full-length cDNA clone ZM_BFc0179C07 mRNA, complete cds.
GenBank	BT066302	1e-130	BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806661.1	1e-129	transcription factor LATE FLOWERING-like
Swissprot	A0A0P0WQ90	1e-72	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A1E5W6W2	1e-129	A0A1E5W6W2_9POAL; Uncharacterized protein
STRING	Pavir.J21430.1.p	1e-167	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	6e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.5NG202900.1.p

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]