PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG213800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 261aa MW: 28398.7 Da PI: 6.7412

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG213800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	231	253	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ sF+++ ++ H+++H Pavir.5NG213800.1.p 231 YKCKLCDASFTTPQTYYGHMSLH 253 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.432	231	258	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0091	231	253	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	233	253	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDPSSYPTKD MSFSQSDDNI SPLHQALRGK MTMPTLSSSG PNAHAPKESN MILANDHSFQ 60 RFYSNSEAPP LQPHPGLTHA PPTSTLASAG LVQSTTENEQ ELMHSFLTIP VGKFLSPPSI 120 TSLLQGNKTA ILHAHLDITG ASNSDPIFQD LASGIPEEKE MEKLLWSSSS QGNSNGKMSY 180 VKPTYSGQFP MFSHVQRQQQ VPSIVNQGSN SSDAIRAAID KTFEFTEVQR YKCKLCDASF 240 TTPQTYYGHM SLHSKGMSSN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG213800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457384.2	9e-54	uncharacterized protein LOC8060818
TrEMBL	A0A2T7DN89	1e-146	A0A2T7DN89_9POAL; Uncharacterized protein
STRING	Pavir.J21200.1.p	1e-174	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19398	6	9

Link Out ? help Back to Top
Phytozome	Pavir.5NG213800.1.p