PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG222700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 338aa MW: 39024.5 Da PI: 9.2576

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG222700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.3	6.1e-14	12	97	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle.....leHnHe 88 fY++Y +e+GF +++ ++ +++ ++++C++eg ++++++ + ++r+r ++r gCka +k++k+ +++ evt++ HnH+ Pavir.5NG222700.1.p 12 FYSKYVEEAGFGIKRYRE-------KMYVKWLNCTREGASASSNSP-VPKERNRGTKRGGCKAGMKLRKHLNSNKEVTSVAievfeASHNHP 95 9**********99864.......36799********9998.9****************99877777666554444499*9 PP FAR1 89 la 90 + Pavir.5NG222700.1.p 96 ML 97 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-8	12	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MTFSSVDHAY HFYSKYVEEA GFGIKRYREK MYVKWLNCTR EGASASSNSP VPKERNRGTK 60 RGGCKAGMKL RKHLNSNKEV TSVAIEVFEA SHNHPMLTKQ AAKHYYSAKK RDPTYKEFIN 120 QLNDALKYWH ADRVRENQAN DISKLLAFFG ECKVENPQFF CDYLLDKKGK IMSILWSHAS 180 QQGNYADFGD VFTFDTTHHT NMYDKPLAMF VGGSNHLKNI KRNFKEVFQS VINHPLTVTE 240 FEQAWEWMLG EFELRGDPTL QSLYEMRTQW VPAYMKPLYC GIMVSTQRGE GVNFAVKSAH 300 VGPSTPMHEF AKQMAKYLHH EMMIEASATY HNTLMMQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG222700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Eb02342.1.p	1e-129	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	2e-22	FAR1-related sequence 1

Link Out ? help Back to Top
Phytozome	Pavir.5NG222700.1.p