PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG224600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 262aa    MW: 27739.9 Da    PI: 8.4078
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG224600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015108130123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+k+F++   L  H  +H
  Pavir.5NG224600.1.p 108 YECKTCNKCFPSFQALGGHRTSH 130
                          99*********999998888777 PP
2zf-C2H212.60.0004168190123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg++F +   L  H+r+H
  Pavir.5NG224600.1.p 168 HECSACGTTFASGQALGGHMRRH 190
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-8108130No hitNo description
PROSITE profilePS5015711.635108135IPR007087Zinc finger, C2H2
SMARTSM003550.11108130IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-10108131IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-8163190No hitNo description
PfamPF139121.8E-10167191IPR007087Zinc finger, C2H2
PROSITE profilePS501579.91168190IPR007087Zinc finger, C2H2
SMARTSM003550.051168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLEEEDGTGQ LLIVSGGGGG GGRLKHRTNK RPRHWSSSLP SPASSSSSRS GSTTTQQEED  60
EEADVAKCLI LLAQGPAVAV EPQPPIVMPA PETPRSTSRM YAGVSSSYEC KTCNKCFPSF  120
QALGGHRTSH SNDRKKQQPR RPEQEAAAAA VTTTLSLRTA ATGRPVAHEC SACGTTFASG  180
QALGGHMRRH RPLTMSAAAP ESVVTADDSS NSNGRRLLLL QERSAGGNHH VNLELDLNLL  240
PAPSTEQEVT SPAKRMHHHL N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG224600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811584.11e-131zinc finger protein ZAT11-like
TrEMBLA0A3L6RWY21e-129A0A3L6RWY2_PANMI; Uncharacterized protein
STRINGPavir.J04850.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-26C2H2 family protein