PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG242200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 334aa MW: 36809.9 Da PI: 6.9962

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG242200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.3	2.6e-27	175	224	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +++l+kyF++pi+ AA+eL+v+lTvLK++CR++GI+RWPhRk+ksl Pavir.5NG242200.1.p 175 DHIGFDELRKYFYMPITRAARELNVGLTVLKKRCRELGIARWPHRKMKSL 224 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.973	162	245	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-22	177	224	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAPCCDDGGR DDDWSQYGLD DFPPLCSAPP PLALLGSPYF SDQLPPLPVD GATVGLDDAL 60 LLPLGDIDLE AFDNADEHKV IVPAGQRTVG QEYAGFDDVG HADQKPMAAI ADSFQPRAIA 120 FETTMSRHGE HQKSSSVAAI VLPPPPPPSM PRPRGKRSVV DHRSAPAAHG KTRLDHIGFD 180 ELRKYFYMPI TRAARELNVG LTVLKKRCRE LGIARWPHRK MKSLKSLILN VQEMGTGMNP 240 AAVQQELAAL ETYCALMEEN PAIELTERTK KLRQAFFKES YKRRRAAAVN VIDHIFSFDD 300 HKYRHQLLPP PPPPPLPPSS AERHGHGSSF FGY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG242200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003933	1e-61	AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBank	AP004258	1e-61	AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBank	AP014957	1e-61	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-61	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815472.1	1e-161	uncharacterized protein LOC112892548
TrEMBL	A0A2T7DL10	1e-180	A0A2T7DL10_9POAL; Uncharacterized protein
STRING	Pavir.Eb01347.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12888	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-34	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pavir.5NG242200.1.p