PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG248400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 330aa    MW: 36743.1 Da    PI: 11.7948
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG248400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.3e-31176234259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++ tY+geHnh 
  Pavir.5NG248400.1.p 176 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERSRSDPNIFILTYTGEHNHA 234
                          79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-30165236IPR003657WRKY domain
PROSITE profilePS5081133.327170236IPR003657WRKY domain
SuperFamilySSF1182904.84E-26174236IPR003657WRKY domain
SMARTSM007744.4E-37175235IPR003657WRKY domain
PfamPF031066.3E-26177233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEEERCFNNW DLDAVVRLGC RRRLSPPRQG GTNPFAALLP PQTRKEEKEK EKEKAAAPEP  60
AKEPEADTGW RFPDLCAGGG QGGDELLRAL LAAHPPLPQP LPTPPSPPTP TPPPPQRQLQ  120
PVDVPPPQVH AAPAASPPAR AQPSGRPVPG GVPRSKRRKN QVKKVVCHVP ADSSSSDVWA  180
WRKYGQKPIK GSPYPRGYYR CSSSKGCAAR KQVERSRSDP NIFILTYTGE HNHAAPTHRN  240
SLAGTTRHKF PPRRRLSRRR RPWWCAALPA PATSRTSPSN RARAGIPRPP QGFPLRRRCA  300
RRPWRRTMTR RMGCGWRTLR WPVRTSCCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-21159237280Disease resistance protein RRS1
5w3x_D5e-21159237280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253260RRLSRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.5996e-48callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG248400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586180.0KU058618.1 UNVERIFIED: Panicum miliaceum WRKY13-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814242.11e-132probable WRKY transcription factor 27
TrEMBLA0A2T7DL501e-134A0A2T7DL50_9POAL; Uncharacterized protein
STRINGPavir.Eb01390.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-46WRKY family protein