PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG248900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 140aa    MW: 15352.4 Da    PI: 9.1671
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG248900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.27.6e-133694563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                         ++ +rk++NR++A+rsR+RK++++++L++ v +L a N a++  +   +  +a++++e+
  Pavir.5NG248900.1.p 36 RKRKRKESNRLSAQRSRARKQQQLDNLTKQVTALRARNGAMAAAAYDVERRCAAVQAEN 94
                         6789************************************************9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-103296IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-83476No hitNo description
PROSITE profilePS502179.7493497IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.38E-83685No hitNo description
PfamPF001705.7E-93690IPR004827Basic-leucine zipper domain
CDDcd147029.21E-123788No hitNo description
PROSITE patternPS0003603954IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MASPSMVSAV TTSPSAGSEP EAPCCDPQLA AVTAERKRKR KESNRLSAQR SRARKQQQLD  60
NLTKQVTALR ARNGAMAAAA YDVERRCAAV QAENALLQAM NLELGERLQS LAGLIRSMED  120
ATMYHQPQLL DANMYNYYY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540RKRKRK
23541RKRKRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG248900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818325.17e-80bZIP transcription factor 44-like
TrEMBLA0A2S3HV762e-78A0A2S3HV76_9POAL; Uncharacterized protein
STRINGPavir.Eb01429.1.p2e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137572428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-09basic leucine-zipper 44