PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG269400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 262aa    MW: 28067.3 Da    PI: 8.6939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG269400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++lv  + ++G g+W++ ar  g++R +k+c++rw++yl
  Pavir.5NG269400.1.p 15 KGPWTLEEDLILVGHISEHGEGSWDKLARAAGLNRNGKSCRLRWLNYL 62
                         79********************************************97 PP
2Myb_DNA-binding461.2e-1472111546
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          T+ Ed  + ++++ lG++ W++I+++++ gRt++++k++w++
  Pavir.5NG269400.1.p  72 TPAEDAAIRELHAALGNR-WSKISKHLP-GRTDNEIKNYWRT 111
                          999***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9561062IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-201065IPR009057Homeodomain-like
SuperFamilySSF466895.72E-3013109IPR009057Homeodomain-like
SMARTSM007175.7E-131464IPR001005SANT/Myb domain
PfamPF002492.7E-141562IPR001005SANT/Myb domain
CDDcd001671.38E-101762No hitNo description
PROSITE profilePS5129423.46263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2366116IPR009057Homeodomain-like
SMARTSM007172.3E-1367115IPR001005SANT/Myb domain
CDDcd001674.59E-1272111No hitNo description
PfamPF002493.6E-1372111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MTTSGRGGDQ PAVRKGPWTL EEDLILVGHI SEHGEGSWDK LARAAGLNRN GKSCRLRWLN  60
YLRPGVRHGG ITPAEDAAIR ELHAALGNRW SKISKHLPGR TDNEIKNYWR TRIQKKQAAA  120
KTTPRQPTPA VSEGSSSAAG NYYWCGTKAD PDRQAAYYCQ KAAMAAASTA AAAVSGEGAG  180
ASTALTSLDS PTARESECRI QQSSYCPDYS ELMSSAAGHA ETAVGVDALT PPYLFSSLFM  240
TPAFWSAVEN FWETKPVASA F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251111623127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG269400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281931e-121KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815397.11e-139transcription factor MYB57-like
TrEMBLA0A2T7DJA71e-139A0A2T7DJA7_9POAL; Uncharacterized protein
STRINGPavir.Eb01665.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-56myb domain protein 21