PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG276800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 367aa    MW: 39039.4 Da    PI: 7.5773
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG276800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32212269259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  Pavir.5NG276800.1.p 212 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 269
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-34196271IPR003657WRKY domain
SuperFamilySSF1182907.59E-29204271IPR003657WRKY domain
PROSITE profilePS5081131.066206271IPR003657WRKY domain
SMARTSM007741.6E-37211270IPR003657WRKY domain
PfamPF031062.2E-25212269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSSRGVGVGG GGGVGGGGGD HHGVYHQHGH GHLARADGAE FVFSNNDMES FFFSQPGSGV  60
VGGGGSSRTG ADELMPPNSS ITDYLQGFLD PSGLARHLDT PCPPAEDAPV KHELSLDAMS  120
HDSQGTSGGA AGEGAALLTP NSSVSLSSSD REGDGQPRRC KKKADDEVAA EGDEKDQENS  180
TKATKPNKKK AEKRQRQPRV AFLTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTP  240
KCGVKKRVER SYQDPSTVIT TYEGQHTHHS PASLRVGGAH LFMAGAHALP PHLMPPGGGF  300
RPDLMGMMRH HPTIPSGASP SMFLPSMPPP QMPAPSPPPP PLQQHHFTDY ALLQDLFPSS  360
TMPNNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-292042721078Probable WRKY transcription factor 4
2lex_A4e-292042721078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG276800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815007.10.0WRKY transcription factor 71-like
TrEMBLA0A3L6SPN10.0A0A3L6SPN1_PANMI; Putative WRKY transcription factor 71
STRINGPavir.Ea02224.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-45WRKY DNA-binding protein 71