PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG276900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 366aa    MW: 39178.4 Da    PI: 6.8931
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG276900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32213270259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  Pavir.5NG276900.1.p 213 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 270
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-34197272IPR003657WRKY domain
SuperFamilySSF1182907.59E-29205272IPR003657WRKY domain
PROSITE profilePS5081131.066207272IPR003657WRKY domain
SMARTSM007741.6E-37212271IPR003657WRKY domain
PfamPF031062.2E-25213270IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSSRGGGIGG GEGGDHHGVY HQHGHGHLAR ADGSEFMFNS NDMESFFFSQ PGPGVVGGGG  60
SSRAGADELM PPYSSLTDYL QGFLDPSGLA RHLDAPFPPA DQEAPVKHEL SLDVMSHDSQ  120
GTSGGGAAGE GAALLTPNSS VSLSSSDREG DGGQPRRCKK KADDEVAAEG DEKDQEDGEN  180
STKATKPNKK KTEKRQRQPR VAFLTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT  240
PKCGVKKRVE RSYQDPSTVI TTYEGQHTHH SPASLRAGGA HLFMAGAHAL PPHLMPGGGG  300
FRPDLMGMMH HIPTGASPSM FLPSMPPPQM PAPSPPPPPI HQQHHFTDYA LLQDLFPSST  360
MPNDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-292052731078Probable WRKY transcription factor 4
2lex_A3e-292052731078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG276900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0394691e-179BT039469.1 Zea mays full-length cDNA clone ZM_BFc0014O13 mRNA, complete cds.
GenBankEU9560251e-179EU956025.1 Zea mays clone 1555761 WRKY11 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankKJ7269371e-179KJ726937.1 Zea mays clone pUT3483 WRKY transcription factor (WRKY64) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815007.10.0WRKY transcription factor 71-like
TrEMBLA0A2T7DJI30.0A0A2T7DJI3_9POAL; Uncharacterized protein
STRINGPavir.Ea02224.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-46WRKY DNA-binding protein 71