PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG278500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 318aa    MW: 34753.4 Da    PI: 6.7836
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG278500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.91.3e-32261172102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F+ k+y+++ d++++ l++w +++nsfvv d+  f++ +Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g++
  Pavir.5NG278500.1.p  26 FVAKTYQMVCDPRTDALVRWGRDNNSFVVADPAGFSRLLLPCFFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQT 106
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll +i r+k+
  Pavir.5NG278500.1.p 107 HLLPRIVRRKK 117
                          ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-3622115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.6E-5222115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-2926115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-162649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-166476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-167789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDGLHTELAL GLLGCGGGGQ LQTAPFVAKT YQMVCDPRTD ALVRWGRDNN SFVVADPAGF  60
SRLLLPCFFK HSNFSSFVRQ LNTYGFRKVH PDRWEFAHES FLRGQTHLLP RIVRRKKRGE  120
GAASSCSAAA GDAGCAAIGG EDRHQEQEGQ LDQEEREALL EEVQRLRREQ TAIGEELAQM  180
SRRLQATERR PDQLMSFLAR LAEDPDGVTR HLVEQAAEKK RRRLQLSSHP ISPIPLAPPP  240
VHPLLGLGGK DCDGWQWAEQ KPPAIILPSF VEPSPSSFGV QQVPDFGGGN GGGIIGMGLT  300
ADDTAVETPF PFCLLGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-231311516129Heat shock factor protein 1
5d5v_B7e-231311516129Heat shock factor protein 1
5d5v_D7e-231311516129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219223KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG278500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694791e-141AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817664.11e-164heat stress transcription factor C-1a-like
SwissprotQ6VBA41e-126HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A2S3HTS71e-162A0A2S3HTS7_9POAL; Uncharacterized protein
TrEMBLA0A2T7DJI41e-162A0A2T7DJI4_9POAL; Uncharacterized protein
STRINGPavir.Eb01618.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-59heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]