PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG278700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 308aa    MW: 32629.8 Da    PI: 7.1521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG278700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.5e-26143201259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Pavir.5NG278700.2.p 143 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 201
                          699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-26141203IPR003657WRKY domain
SMARTSM007743.2E-31142202IPR003657WRKY domain
SuperFamilySSF1182902.88E-24142203IPR003657WRKY domain
PROSITE profilePS5081129.126143203IPR003657WRKY domain
PfamPF031061.8E-22144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAALSPPWCN RPASTAEISG RNLAGFLSRG HERATPPPPA AAKGAARLYD LEYLDLDRKP  60
FLLPATPPPL GARAAGDDAC EREVMISFPA AAAAASTSGA QQRALPPGRK AGARTPRPKR  120
SKKSQLKKVV REMPVADGGA SSSDPWAWRK YGQKPIKGSP YPRGYYKCSS MKGCMARKLV  180
ERSPAKPGVL IVTYMAEHCH PVPTQLNALA GTTRHKSSPK GGHDHEQGPP PAGAAAEDAA  240
RCDADSNDKS ALEFGAEDMT AVDDESELWP AGMDLDELLA PVDDDFDFEH AIDEGDGDGV  300
LGRRLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-18123204280Disease resistance protein RRS1
5w3x_D4e-18123204280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG278700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-119AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-119AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815405.11e-145probable WRKY transcription factor 27
TrEMBLA0A3L6R1B61e-146A0A3L6R1B6_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Eb01119.1.p1e-161(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-36WRKY family protein