PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG281700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 79aa    MW: 9105.04 Da    PI: 6.8081
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG281700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-093372445
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         +T+ E++l  + +++ G++ W++Ia +++ gRt++++  +w 
  Pavir.5NG281700.1.p 33 FTEAEEDLVSRMHRLVGNR-WELIAGRIP-GRTAEEVEMFWS 72
                         9******************.*********.*******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-72977IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-83274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-123373IPR009057Homeodomain-like
PROSITE profilePS500906.5393375IPR017877Myb-like domain
CDDcd001671.39E-63371No hitNo description
PfamPF002491.2E-83372IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010091Biological Processtrichome branching
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048765Biological Processroot hair cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MDSRGSSRDK KSKDNDRHEA KEANSTAQNF VDFTEAEEDL VSRMHRLVGN RWELIAGRIP  60
GRTAEEVEMF WSKKHQEK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG281700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730984e-76EU973098.1 Zea mays clone 393226 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458170.11e-43MYB-like transcription factor ETC3
TrEMBLC5XR423e-42C5XR42_SORBI; Uncharacterized protein
STRINGPavir.Eb02165.1.p6e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52753157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01060.16e-21CAPRICE-like MYB3