PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG289600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 503aa MW: 59810.6 Da PI: 9.2474

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG289600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.9	1.6e-08	6	45	50	90
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 er t++ +t+ k++++++++ ++ w+vt+l+leHnH ++ Pavir.5NG289600.1.p 6 AERDTNVLVKTNYKCCMVISER-KDIWRVTRLQLEHNHLMS 45 68999**************9.9************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-6	6	45	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-34	164	257	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	431	467	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-6	442	469	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MEEITAERDT NVLVKTNYKC CMVISERKDI WRVTRLQLEH NHLMSPGTKY FRAHKNMTDQ 60 EKKKIRTLHK CNIPTKKMMY LLSFLRGGLG ATPYRDKDIT NYRGKISRET NQNDIMQALM 120 YLTKKKEEDP SFYFRFLVDS THKVKCIFWT DPRSIRYYQN FGDCVSFDTT YLTNKYRMPF 180 APFAGITGHG LTCIFGCALI SDETTDTFKW LFQTFLEAVG GKEPISIMTD QDGTMRSAIA 240 QIFPNASHRS CVFHIKEEFK DIIDNSLTKE EFETLWQQMI QKHEIQHIKY FQDIYNTRET 300 WAPVWFKQEF YPFINTTSRS EGTNARYKRN VGPQYSITSF LKEYERIQET IYDNERQADH 360 ETNIKKKSKL WSNYCIEQQA QEAYNLKIFK KFQWQLRCAT KLQADELEKG KLYKVYTTPD 420 HPFKEFRSRT YIVAADQQNQ DFSCICAKFQ KDGMLCCHIL KVMVNNDISK IPEKYIIDRW 480 RKKEQKMLLL SDTIIFHSWQ RK*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MEEITAERDT NVLVKTNYKC CMVISERKDI WRVTRLQLEH NHLMSPGTKY FRAHKNMTDQ  60
EKKKIRTLHK CNIPTKKMMY LLSFLRGGLG ATPYRDKDIT NYRGKISRET NQNDIMQALM  120
YLTKKKEEDP SFYFRFLVDS THKVKCIFWT DPRSIRYYQN FGDCVSFDTT YLTNKYRMPF  180
APFAGITGHG LTCIFGCALI SDETTDTFKW LFQTFLEAVG GKEPISIMTD QDGTMRSAIA  240
QIFPNASHRS CVFHIKEEFK DIIDNSLTKE EFETLWQQMI QKHEIQHIKY FQDIYNTRET  300
WAPVWFKQEF YPFINTTSRS EGTNARYKRN VGPQYSITSF LKEYERIQET IYDNERQADH  360
ETNIKKKSKL WSNYCIEQQA QEAYNLKIFK KFQWQLRCAT KLQADELEKG KLYKVYTTPD  420
HPFKEFRSRT YIVAADQQNQ DFSCICAKFQ KDGMLCCHIL KVMVNNDISK IPEKYIIDRW  480
RKKEQKMLLL SDTIIFHSWQ RK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG289600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002439945.2	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021319297.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q01LB7	0.0	Q01LB7_ORYSA; OSIGBa0145N07.10 protein
TrEMBL	Q8H3L3	0.0	Q8H3L3_ORYSJ; Putative far-red impaired response protein
STRING	Pavir.J19355.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-79	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5NG289600.1.p