PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG294400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 407aa    MW: 43281.1 Da    PI: 6.5023
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG294400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.22.4e-09948140
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                         k ien  +r   + +Rr g+  K + L +LC++++++i f
  Pavir.5NG294400.1.p  9 KLIENPKKRRAAYKNRRDGLVQKTSQLATLCGVDALLICF 48
                         569***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-6159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.914148IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-14156IPR002100Transcription factor, MADS-box
CDDcd002661.16E-14350No hitNo description
PfamPF003192.5E-121151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MPRGKLGMKL IENPKKRRAA YKNRRDGLVQ KTSQLATLCG VDALLICFDP ARPAGAGQDG  60
GGGAVTTWPA DREDVLKLIR RYRETPADKV RHSFTAAAYH QEELAKQQRK LLKIEQCGPD  120
ALSLEDCRLA DLFPADLAAL LATLDEALRK AQQRIVALGG RVGDGGGGGD VPAATAMVAA  180
APAPLPADYN SFDLAFSVPD AGSMVTQYYC PPPLDMLSQP FPLEPPCLAY HQMPPSPGYI  240
FKMPPPPPLP LIAPLDMGMA GTGTVDFLPF ATNLSHGSGA TGPGFYDDFV PGFDATGGGV  300
YVDGYVSGGG QSFAAGHAGD SYQHEHRLPA GVWPVSGLNN NPGPMDAAAL LQERIDFAAL  360
RPGSCSSSSC TCFQERSRRN SYPHDGYVFH PDRCRVAVDL AYHKLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166GGRVGDGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG294400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7EG120.0A0A2T7EG12_9POAL; Uncharacterized protein
STRINGPavir.Eb00786.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.18e-12M-type_MADS family protein