PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG303400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 726aa MW: 83319.3 Da PI: 9.3114

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG303400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.1	2.4e-07	52	87	57	91
FAR1 57 etrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 ++r+gC a ++vk +k +g w+ ++++ HnH+l p Pavir.5NG303400.1.p 52 SKRCGCPAYVRVKHDKkRGLWYFDHVQPAHNHKLEP 87 69**********999**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-4	52	87	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.6E-22	178	269	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MTTPTAAQAP AQNSEAESAD PLHHVTTLTP PAALPPGSLR TPDAVQIVYP GSKRCGCPAY 60 VRVKHDKKRG LWYFDHVQPA HNHKLEPSPR MTRYMHAHKN MEEGMCDIFN IITRNGIPHQ 120 AALNMMADLY DGRHMWGFTE KDIKNMECKE NNEHFYWDVD ADPKTRVLRA EYRDFGDVIT 180 FDTTHKTNSR HMLLAMFVGA NNNLKNVTFG QALIGDESTR SFRWLFETFK SCMGGRQPHV 240 ILTDEDPAMR QEIKVVFDKT HHINYRWNIL RPWEFKLDQL YTQHKNMKLK EKLESLINYP 300 LGPTQFEVEW NRLVDECGIA EHPAIKALWE KRERWISAYF NGMYYGRMTS TQISESQNRV 360 LKDAYVNEST RLHMFARRML DSFQHADHMD AGETHYAQFD EQLSRVYTRA VYQECKKQYN 420 NSTAFVIEPD PDPRVKNEWL VKHENGLFCM HIIRAFTHLQ VRRIPERYIL KRYTRDAIEK 480 VTWDRHDGVR IGAQTSKEQC RMSKLLPKLM RLGRAGSKSD HAFEETNRQL DKITLGIELF 540 PRSADDESSG PAPPASGSVE QSGSAGTNSP PSSTPMHAGM LLIEPPMSRT KGRGPGKQKN 600 NDVQAPLNGT SLSTYTRLNY GDRQCSICRV RGTHYNTTCP MNPDRSKSAE MRAARKNTKK 660 NDGPPRKRGR PKIVMDLHDE SDLSQDELSE DELRVVRARS AATDGRVGQV GAEYNGRRQR 720 DKRVK*

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MTTPTAAQAP AQNSEAESAD PLHHVTTLTP PAALPPGSLR TPDAVQIVYP GSKRCGCPAY  60
VRVKHDKKRG LWYFDHVQPA HNHKLEPSPR MTRYMHAHKN MEEGMCDIFN IITRNGIPHQ  120
AALNMMADLY DGRHMWGFTE KDIKNMECKE NNEHFYWDVD ADPKTRVLRA EYRDFGDVIT  180
FDTTHKTNSR HMLLAMFVGA NNNLKNVTFG QALIGDESTR SFRWLFETFK SCMGGRQPHV  240
ILTDEDPAMR QEIKVVFDKT HHINYRWNIL RPWEFKLDQL YTQHKNMKLK EKLESLINYP  300
LGPTQFEVEW NRLVDECGIA EHPAIKALWE KRERWISAYF NGMYYGRMTS TQISESQNRV  360
LKDAYVNEST RLHMFARRML DSFQHADHMD AGETHYAQFD EQLSRVYTRA VYQECKKQYN  420
NSTAFVIEPD PDPRVKNEWL VKHENGLFCM HIIRAFTHLQ VRRIPERYIL KRYTRDAIEK  480
VTWDRHDGVR IGAQTSKEQC RMSKLLPKLM RLGRAGSKSD HAFEETNRQL DKITLGIELF  540
PRSADDESSG PAPPASGSVE QSGSAGTNSP PSSTPMHAGM LLIEPPMSRT KGRGPGKQKN  600
NDVQAPLNGT SLSTYTRLNY GDRQCSICRV RGTHYNTTCP MNPDRSKSAE MRAARKNTKK  660
NDGPPRKRGR PKIVMDLHDE SDLSQDELSE DELRVVRARS AATDGRVGQV GAEYNGRRQR  720
DKRVK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG303400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008652264.2	0.0	protein FAR1-RELATED SEQUENCE 4-like
Refseq	XP_008656030.2	0.0	protein FAR1-RELATED SEQUENCE 4-like
Refseq	XP_020400315.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020400320.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3L6Q395	1e-140	A0A3L6Q395_PANMI; Uncharacterized protein
STRING	Pavir.Ea02077.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-41	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5NG303400.1.p