PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG305100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 103aa    MW: 11887.7 Da    PI: 8.6685
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG305100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-082347227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         k+elC+ +   G C+y +rC+FaHg+
  Pavir.5NG305100.1.p 23 KMELCDKWEH-GVCPYDGRCRFAHGM 47
                         89*******9.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.73E-72051IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-62147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-112150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0472148IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-62347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MNCCKEKDDG EVEMEVYGQG TLKMELCDKW EHGVCPYDGR CRFAHGMEEL CLVIRHPRCR  60
PSRASCSLLP PTASPYGHRC HFHHSLPRER PPSPKPRRSR RR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG305100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796552.15e-33putative zinc finger CCCH domain-containing protein 21 isoform X1
RefseqXP_025796553.15e-33putative zinc finger CCCH domain-containing protein 21 isoform X2
RefseqXP_025796555.13e-33putative zinc finger CCCH domain-containing protein 21 isoform X3
SwissprotQ10MN82e-23C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A2S3IRB75e-32A0A2S3IRB7_9POAL; Uncharacterized protein
TrEMBLA0A3L6SD947e-34A0A3L6SD94_PANMI; Uncharacterized protein
STRINGPavir.J22317.1.p3e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-21C3H family protein