PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG311800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 237aa    MW: 25640.5 Da    PI: 7.6273
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG311800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.56.2e-14846341
                  TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                         + +CnCkk+ Clk+YC+Cf+ + +Cs+ C+C++C N+e+
  Pavir.5NG311800.1.p  8 RPSCNCKKTTCLKRYCQCFQGHFFCSHACNCKGCWNSEH 46
                         568*********************************986 PP
2TCR45.21.9e-1470107239
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          + kgC+C+ks C+k+YCeCf++++ C+ +CkC++C+N+
  Pavir.5NG311800.1.p  70 HGKGCTCNKSGCKKNYCECFKKQVACTTRCKCQGCENS 107
                          579**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.2E-9547IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163425.6357109IPR005172CRC domain
PfamPF036382.1E-101044IPR005172CRC domain
SMARTSM011143.2E-969110IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-1072107IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDEDKEQRPS CNCKKTTCLK RYCQCFQGHF FCSHACNCKG CWNSEHRRTF TKPGAPQSKD  60
SALTAEQRVH GKGCTCNKSG CKKNYCECFK KQVACTTRCK CQGCENSYGS GGKGLQENSD  120
PGRPSGKPNG EPGGGDGSPG GSGESAVVID EELLRPTEAG VAENVAAIDD PSDSGPCIHG  180
GIYIYQNSQP QRNQGPVQAI LTHEKPTTTR RIPKQVEIDE AAEIQNIGNR YDCTWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-11810611120Protein lin-54 homolog
5fd3_B1e-11810611120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG311800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814306.15e-99protein lin-54-like
TrEMBLA0A3L6SGH01e-110A0A3L6SGH0_PANMI; Protein tesmin/TSO1-like CXC 3
STRINGPavir.Eb02050.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.12e-20Tesmin/TSO1-like CXC domain-containing protein