PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG311800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 191aa    MW: 20190.4 Da    PI: 7.2417
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG311800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.61.3e-142461239
                  TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
                         + kgC+C+ks C+k+YCeCf++++ C+ +CkC++C+N+
  Pavir.5NG311800.2.p 24 HGKGCTCNKSGCKKNYCECFKKQVACTTRCKCQGCENS 61
                         579**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163416.768163IPR005172CRC domain
SMARTSM011143.2E-92364IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.9E-112661IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MRLKTKPGAP QSKDSALTAE QRVHGKGCTC NKSGCKKNYC ECFKKQVACT TRCKCQGCEN  60
SYGSGGKGLQ ENSDPGRPSG KPNGEPGGGD GSPGGSGESA VVIDEELLRP TEAGVAENVA  120
AIDDPSDSGP CIHGGIYIYQ NSQPQRNQGP VQAILTHEKP TTTRRIPKQV EIDEAAEIQN  180
IGNRYDCTWH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG311800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814306.12e-63protein lin-54-like
TrEMBLA0A3L6SGH02e-76A0A3L6SGH0_PANMI; Protein tesmin/TSO1-like CXC 3
STRINGPavir.Eb02050.1.p1e-138(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.13e-12Tesmin/TSO1-like CXC domain-containing protein