PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG319200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 214aa    MW: 22910.2 Da    PI: 5.6001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG319200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1852100355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr+p+    + +r++lg+f t+ +Aa a+++a+++++g
  Pavir.5NG319200.1.p  52 YRGVRQRS-WGKWVAEIREPN----SgRRHWLGTFNTPVDAALAYDRAAEAFYG 100
                          9****999.**********93....35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-2951109IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2151109IPR016177DNA-binding domain
PROSITE profilePS5103221.31151108IPR001471AP2/ERF domain
SMARTSM003801.1E-3351114IPR001471AP2/ERF domain
CDDcd000181.27E-2851110No hitNo description
PfamPF008476.7E-1252100IPR001471AP2/ERF domain
PRINTSPR003676.7E-115263IPR001471AP2/ERF domain
PRINTSPR003676.7E-1190110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MRCVLHECTC RATGTQQARA NGSANAKPGS GNRRPRSGQR GPGGPDNMRH NYRGVRQRSW  60
GKWVAEIREP NSGRRHWLGT FNTPVDAALA YDRAAEAFYG NHAQLNFPAD QAAAVTVATA  120
APAQWQPPSC SPAPATTADV FEENQVNPLV DVAQGAGGGE VANQPQQQGA SWLSPEAVRD  180
DDPNDISMYI DFDAVDHMVP CFPGIKADDC QPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1751108260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-1751108563ATERF1
3gcc_A4e-1751108563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG319200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809123.11e-103dehydration-responsive element-binding protein 2D-like
TrEMBLA0A3L6T5W91e-120A0A3L6T5W9_PANMI; Dehydration-responsive element-binding protein 2D-like
STRINGPavir.J01802.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-17ERF family protein