PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG347600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 214aa    MW: 23016.9 Da    PI: 7.2538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG347600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1953103256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Pavir.5NG347600.1.p  53 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 103
                          6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.48753110IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2253111IPR016177DNA-binding domain
SMARTSM003802.0E-3753116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-3253111IPR001471AP2/ERF domain
CDDcd000181.90E-1653112No hitNo description
PRINTSPR003674.0E-115465IPR001471AP2/ERF domain
PfamPF008471.1E-1254102IPR001471AP2/ERF domain
PRINTSPR003674.0E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MCGGAIIFDY IPARRRVSAA DFWPDSEADA EDSHAPRASG ERAPRAKRCR KNQYRGIRQR  60
PWGKWAAEIR DPVKGVRVWL GTYPTAEAAA RAYDRAARRI RGAKAKVNFP NDTSSPVSVP  120
PPPPAASAPA VLPAPKAEAG VSDEVKELSE ELMAYENYMN FLGIPYMEGG STAAPAAAAA  180
PAPVAEEQPQ APVPSGLWSF EDYYPASLSL FTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2253115568ATERF1
3gcc_A2e-2253115568ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.9160.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG347600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9522801e-129EU952280.1 Zea mays clone 1275260 ethylene-responsive factor-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817800.11e-103ethylene-responsive transcription factor ERF071-like
TrEMBLA0A2T8IMM71e-102A0A2T8IMM7_9POAL; Uncharacterized protein
STRINGPavir.Eb02324.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-30ERF family protein