PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG389900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 249aa    MW: 27738.9 Da    PI: 6.2182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG389900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05219241123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+ +F+++ +++ H+++H
  Pavir.5NG389900.1.p 219 YTCKLCNATFTTPQTYHGHMSLH 241
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808219241IPR007087Zinc finger, C2H2
PfamPF128742.7E-4219238No hitNo description
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDPSSYPRRD TSFIQSDDTF TPLHQDLWGQ TTMPTLSSSV PNAHAPKEPN MLLNNDYSFQ  60
TYYSNIDAPP PQPHPVFTQP PPTSTITSAR FQSPAENEQE LMHTFLTIPV GKFLRDKTAT  120
LHAHLDIVGA LDPGPIFQDP SSDILKEEMR KPLASSSSHC DPYEKMSYVK PTYLGQSPMT  180
YHVQREQQVL STNIPSGNIN YAIGATMNSA FEFSEVQHYT CKLCNATFTT PQTYHGHMSL  240
HNKGLSSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG389900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457384.22e-52uncharacterized protein LOC8060818
TrEMBLA0A2T7DLZ11e-135A0A2T7DLZ1_9POAL; Uncharacterized protein
STRINGPavir.Eb01312.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1939869