PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG400200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 184aa MW: 21492.4 Da PI: 9.9156

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG400200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.9	1.6e-18	30	121	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +f+n++A++ GFs+rk k ++ +++ i +r++ Csk g r+++ ++k+rr+r++tr +C ++++k ++ ++ +v+k HnH Pavir.5NG400200.1.p 30 EFFNAFARNKGFSLRKGKVTRAPNKDDISSRQYLCSKAGARQPKFLImEDKKRRPRPVTRFECPFEVVIKHNSeGNVRYVHKYIDTHNHV 119 6*******************99999***********98765578999****************888899********8 PP FAR1 89 la 90 +a Pavir.5NG400200.1.p 120 MA 121 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-16	30	120	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSAPTQTLEE LAEYEYIVEK TFLSEDNGYE FFNAFARNKG FSLRKGKVTR APNKDDISSR 60 QYLCSKAGAR QPKFLIMEDK KRRPRPVTRF ECPFEVVIKH NSEGNVRYVH KYIDTHNHVM 120 ARSSEIGFLF SHRRISERQK KEILAYQTAG LRKYQIMDVL EQRYGGPHNV GHVTKDLYNF 180 SYI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG400200.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K3ZL91	4e-77	K3ZL91_SETIT; Uncharacterized protein
STRING	Pavir.J16066.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-18	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5NG400200.1.p