PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG409700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 314aa    MW: 32330.1 Da    PI: 8.7228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG409700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.21.1e-25136197159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg +WrKYGqK++ g+++pr+Y+rCt++   +C++ k+v+r++ dp +++++Y+g+H++ 
  Pavir.5NG409700.1.p 136 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqSCSASKQVQRTDGDPLLFDVVYHGSHTCA 197
                          58***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-27121198IPR003657WRKY domain
SuperFamilySSF1182902.09E-24130198IPR003657WRKY domain
PROSITE profilePS5081120.231131194IPR003657WRKY domain
SMARTSM007743.9E-37136198IPR003657WRKY domain
PfamPF031062.1E-24137196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEGMSEEKCA LVAELVRVLE MVRQLEAHTA GQQQLGGAAA GGEQRCRALV CTMRDSIDRA  60
LHMAMSCCAG GSSPAGGQPE SPPSGGDGSP RSAGSDQAGG DFRGRGNAAR QCKKRKTLPK  120
RSTQVRVSAV QDVTPLDDGL SWRKYGQKDI LGAKYPRAYF RCTHRHTQSC SASKQVQRTD  180
GDPLLFDVVY HGSHTCAQAQ QQGAAAHPGG STQGAAGPVL PFSLPSNRPA AGADDAGGSR  240
LPGGAGARGT ALPFVSPATP EGLARDAPHH DAELACTTNS PPIAHGGDGL HVPAGRRRFL  300
GGPGQLLLST NST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-22133196568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG409700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817578.11e-143probable WRKY transcription factor 41
TrEMBLA0A3L6SIL21e-149A0A3L6SIL2_PANMI; Putative WRKY transcription factor 53
STRINGPavir.Eb01752.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-34WRKY family protein