PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG413600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 254aa    MW: 28303.5 Da    PI: 10.0076
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG413600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP60.52.7e-1962137371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse..........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          +++Lr +++    + +k+e+ g++t+neva+e+ +e          d+kn++RR+ D++NVL al++i+k +k+ei+w g
  Pavir.5NG413600.1.p  62 GWGLREYSKI---VSKKVETkGRTTYNEVADEICAElkltlngqefDEKNIKRRVNDAFNVLIALRVIAK-DKKEIKWVG 137
                          6899****99...99999999*************************************************.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-3158141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-1860137IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.11E-1463138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.0E-1664137IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.27E-24142241IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.49E-29144248No hitNo description
SMARTSM011381.0E-25144247IPR014889Transcription factor DP, C-terminal
PfamPF087811.2E-21145242IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAPPCGDAAA APELTSLRIP DGAGLPPLPR RGGGGGGNAA EREEEGDKSA RKEKAGAQRI  60
AGWGLREYSK IVSKKVETKG RTTYNEVADE ICAELKLTLN GQEFDEKNIK RRVNDAFNVL  120
IALRVIAKDK KEIKWVGLSN FRYEKIKKLE EAHKELMTRI KNKKKLLQEI EKQFDDLQNI  180
KFRNQVLQRP AESANGICLP FLLVKASRKA RVEIEISEDS KFAGFDFNCA PFTLHDDVSI  240
LDGIRRNSIR RAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-2162138989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG413600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819130.11e-162transcription factor-like protein DPB
TrEMBLA0A3L6R0L21e-166A0A3L6R0L2_PANMI; Transcription factor-like protein DPB
STRINGPavir.J03431.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-54Transcription factor DP