PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG419100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 235aa    MW: 23735.4 Da    PI: 7.7552
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG419100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA65.84.8e-21118152135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nCgtt+TplWR+gp+g+k+LCnaCG++++k+++
  Pavir.5NG419100.1.p 118 CANCGTTSTPLWRNGPRGPKSLCNACGIRFKKEER 152
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.28E-14110152No hitNo description
PROSITE profilePS5011414.655112148IPR000679Zinc finger, GATA-type
SMARTSM004018.2E-21112165IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-17116152IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.76E-14117149No hitNo description
PROSITE patternPS003440118143IPR000679Zinc finger, GATA-type
PfamPF003201.3E-18118152IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLHEAVPCTC GLLYGTCGGG CSLLFAASEG SHRSQYYERC GGGGKEAGFG AAGSYGGSVD  60
CTLSLGTSST RRAEAAGAPR APPAPSGALP WPEAPPVPSC NSGSSHYGAA EANNARRCAN  120
CGTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRAAAAAAA PAAVASDGGV EYASYGYARQ  180
PQQWGCYGPA SFGVFGDAAG EVGGPCLPWG LGVMPASSPE FGAAREMPSL FQYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG419100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7222062e-46GU722206.1 Hordeum vulgare subsp. vulgare cultivar Bowman third outer glume (TRD) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815390.11e-103GATA transcription factor 15-like
TrEMBLA0A3L6SU771e-109A0A3L6SU77_PANMI; GATA transcription factor 20-like
STRINGPavir.Eb02678.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-17GATA transcription factor 19