PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG437300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 234aa    MW: 24946 Da    PI: 7.1608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG437300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.4e-31147205159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh 
  Pavir.5NG437300.1.p 147 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 205
                          59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-32134206IPR003657WRKY domain
SuperFamilySSF1182903.01E-27140206IPR003657WRKY domain
PROSITE profilePS5081130.469142207IPR003657WRKY domain
SMARTSM007741.5E-34147206IPR003657WRKY domain
PfamPF031062.6E-24148204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MHMALASCNS LPADAACLFP AMAYRHPCDA GGLAASAFYG AARSPAAALL SQPQLAFGAA  60
ALTSLAPPPQ PDAVFERLSE EGVVSSVVPG TTTFGRPPPE MPVEYAVPDA SGYAHHAMGA  120
AAMAGAEGST RTTDRIAFRV RSQEEVLDDG YKWRKYGKKS VKNSPNPRNY YRCSTEGCNV  180
KKRVERDKDD PSYVVTMYEG VHNHVSPGTI YYATQDAASG RFFVAGMHQA LDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-23137207777Probable WRKY transcription factor 4
2lex_A7e-23137207777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG437300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586121e-102KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817958.11e-127probable WRKY transcription factor 57
TrEMBLA0A2S3HST61e-126A0A2S3HST6_9POAL; Uncharacterized protein
STRINGPavir.Eb02766.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.17e-39WRKY DNA-binding protein 51