PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG443900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 350aa    MW: 36796.9 Da    PI: 10.1728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG443900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13202248455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Pavir.5NG443900.1.p 202 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 248
                          799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.8E-17195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-15201251No hitNo description
Gene3DG3DSA:4.10.280.102.0E-16201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16201253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-11202248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MYFLASMYFS FPEGAGGPGH ALASGRHAWV AVDPGPRGAG AGAGEAAPGW YVRASLAQSA  60
GLRTVVFLPC KGGVLELGSD VAVRETPEAL RVIQSALAVA PPAAREERMR IFGKDLSPSG  120
RAPRPQPMGL VVAGDNWAPQ LGGHAAASAP AANKEAAKPK PPEPPRSIDF TKPGKAGQAG  180
GEERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPKISK MDKASLLSDA  240
IAYIQELEDR LRGCAAGAGA RAESPAVEVK TMQDEVVLRV TTPLYAHPVS RVFHAIRDAQ  300
LSVAASDVAV ADDAVTHTLV LRSPGPEQLT AETVLAAMSR GMTSATPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26196284282Transcription factor MYC2
5gnj_B2e-26196284282Transcription factor MYC2
5gnj_E2e-26196284282Transcription factor MYC2
5gnj_F2e-26196284282Transcription factor MYC2
5gnj_G2e-26196284282Transcription factor MYC2
5gnj_I2e-26196284282Transcription factor MYC2
5gnj_M2e-26196284282Transcription factor MYC2
5gnj_N2e-26196284282Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183191RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.26350.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG443900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9680150.0EU968015.1 Zea mays clone 312846 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819579.10.0transcription factor bHLH13-like
TrEMBLA0A3L6SLM10.0A0A3L6SLM1_PANMI; Transcription factor bHLH13-like
STRINGPavir.J12952.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.17e-44bHLH family protein