PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG470200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 361aa MW: 40203.8 Da PI: 5.2131

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG470200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.1	1.1e-21	153	235	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA vGFsvrks++k++k +++ ++ fvCs +g r++e ++ + trt C+a+++ + +k+++w v+k++ eHnH la Pavir.5NG470200.1.p 153 EMYNTYAGLVGFSVRKSRTKRRKSDDSLSQKYFVCSGQGLRKNEASQ-------KDITRTCCDARVQFSISKENVWTVQKIVVEHNHYLA 235 58*************************************998766.......99*****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-18	153	235	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MDQRASSMDG VRGPKDIASS AFMEDPRSLQ IVVVGGDGGE EEQPIRQIGS MDNEIPNETT 60 AGGDGHATDG AEGGVPATSL GDREQAILSS SILRLNAPSA NHDVACDRGE EEQQIPHVGA 120 VEIEVPNEDV VDKYAEMAPK VGMTFDCEKK AYEMYNTYAG LVGFSVRKSR TKRRKSDDSL 180 SQKYFVCSGQ GLRKNEASQK DITRTCCDAR VQFSISKENV WTVQKIVVEH NHYLASPNKI 240 HKLRSQREII EADRKLIGQA RRSGMKPSQV FNFMKEHYGG EDKVPFTKMD CYNEIGRERR 300 QYLEGNDAQT LSEYLRNKQA QDPTFFYAVE VDKDTGHIAN FFWADGQSIM DYKCFGDAVL 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MDQRASSMDG VRGPKDIASS AFMEDPRSLQ IVVVGGDGGE EEQPIRQIGS MDNEIPNETT  60
AGGDGHATDG AEGGVPATSL GDREQAILSS SILRLNAPSA NHDVACDRGE EEQQIPHVGA  120
VEIEVPNEDV VDKYAEMAPK VGMTFDCEKK AYEMYNTYAG LVGFSVRKSR TKRRKSDDSL  180
SQKYFVCSGQ GLRKNEASQK DITRTCCDAR VQFSISKENV WTVQKIVVEH NHYLASPNKI  240
HKLRSQREII EADRKLIGQA RRSGMKPSQV FNFMKEHYGG EDKVPFTKMD CYNEIGRERR  300
QYLEGNDAQT LSEYLRNKQA QDPTFFYAVE VDKDTGHIAN FFWADGQSIM DYKCFGDAVL  360
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG470200.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008662483.1	1e-166	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020406333.1	1e-168	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q10HU3	1e-104	Q10HU3_ORYSJ; Os03g0576100 protein
TrEMBL	Q75G83	1e-104	Q75G83_ORYSJ; Putative transposase
STRING	Sb04g005390.1	1e-118	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-41	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5NG470200.1.p