PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG472400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 293aa    MW: 31377.7 Da    PI: 4.5749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG472400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-151462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd +l   v+++G+  +W + +++ g++R++k+c++rw++yl
  Pavir.5NG472400.1.p 14 RGPWSQEEDAILRSFVERFGNAgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                         89******************99*************************97 PP
2Myb_DNA-binding42.51.5e-1369111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T eEd+l++ +  + G++ W+ Ia++++ gRt++++k++w++
  Pavir.5NG472400.1.p  69 GGFTDEEDDLILSLYGEIGSK-WSVIASRLP-GRTDNDVKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.678962IPR017930Myb domain
SuperFamilySSF466895.99E-2712109IPR009057Homeodomain-like
SMARTSM007171.4E-101364IPR001005SANT/Myb domain
PfamPF002498.6E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-221569IPR009057Homeodomain-like
CDDcd001676.76E-81662No hitNo description
PROSITE profilePS5129420.08463117IPR017930Myb domain
SMARTSM007172.4E-1267115IPR001005SANT/Myb domain
PfamPF002491.5E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2270116IPR009057Homeodomain-like
CDDcd001671.00E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRSPCCDKT KVKRGPWSQE EDAILRSFVE RFGNAGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPELRHGG FTDEEDDLIL SLYGEIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRYLAS  120
TREGRPPAPP PATAADSQPQ DDDEHPAAPT PPALANLDDA SDTGAAAVDD DALLLKSEQL  180
YAELVGLIEQ QSSWLTTTTG PPSSSAATPS SSSGTSPMGT SSGSCAAVWP TSKDVHDTTL  240
LSESSSSSLF DACHGVVGDD AFGAALLPAY SFQDLLAASY DEFTAVTQEL QY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG472400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-131AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818168.11e-134transcription factor MYB4-like
TrEMBLA0A3L6SJ651e-156A0A3L6SJ65_PANMI; Myb-related protein Zm38-like
STRINGPavir.Eb02926.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.16e-66myb domain protein 87