PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG473500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 416aa    MW: 46347.1 Da    PI: 10.2576
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG473500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.57.9e-2119118198
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          ffkvl   +   ++rl +p +f++++           +ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L+e +f+v
  Pavir.5NG473500.1.p  19 FFKVL---MGDFKKRLKIPPDFCKHIpweasrkkaRAVKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFLV 103
                          66777...4455668********888*****999988899*******************..***************************** PP

                          EEE-SSSEE..EEEEE- CS
                   B3  82 Fkldgrsefelvvkvfr 98 
                          F++dg+++f  + +vf+
  Pavir.5NG473500.1.p 104 FRYDGDTRF--TAMVFD 118
                          ****99888..666665 PP
2B349.95.7e-16310396598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +++ +v  s ++++p  f ++h   ++e ++++l+ + g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+g  ef  +v
  Pavir.5NG473500.1.p 310 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRGPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVGAAEF--RV 392
                          6788999999*********9995..345679***************4.444455..9***********************997777..99 PP

                          EEE- CS
                   B3  95 kvfr 98 
                          +vfr
  Pavir.5NG473500.1.p 393 HVFR 396
                          9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2014122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2015122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.90116120IPR003340B3 DNA binding domain
CDDcd100175.81E-1817118No hitNo description
PfamPF023622.6E-1819116IPR003340B3 DNA binding domain
SMARTSM010192.2E-1219120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-20299396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-23300396IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-23304396No hitNo description
SMARTSM010191.7E-10306398IPR003340B3 DNA binding domain
PROSITE profilePS5086313.549306398IPR003340B3 DNA binding domain
PfamPF023621.3E-14308396IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MPAAGRRSPC ATGERRPHFF KVLMGDFKKR LKIPPDFCKH IPWEASRKKA RAVKEASMAA  60
TLEGPSGRTW LVVIRRTAEG TFFTSGWPKF VQDQALRELE FLVFRYDGDT RFTAMVFDTS  120
ACEREDLLLG SGDPRSGRQG SKRGRATTGA KPKRARKDSV GKELVPYRAT TATAGDRQLQ  180
AACSNWTPES AGGAVKTEIE DADELALCVV IPAPPPPPPQ DDPAPTKRRR WGPQPQDPGA  240
ETRRVVKTRS IHEDLQAAAA VPDDADIPAC VRRYRGYVSR RRPVTGAERQ LAMELAYAFR  300
SPLPYCVIRM STMHVYYSFM MRFPTGFSRQ HLPRERTDVV LRGPGGKAWV VLYIPNTRDR  360
LSRGWCAFAR GNCLEEGDYC VFELVGAAEF RVHVFRVVDP PVPAVRLRSA ASDPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG473500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032292e-94AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149572e-94AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-94CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814249.10.0B3 domain-containing protein Os01g0723500-like
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A3L6SU880.0A0A3L6SU88_PANMI; B3 domain-containing protein
STRINGPavir.Eb02930.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-13B3 family protein