PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG480800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 253aa    MW: 26949.4 Da    PI: 7.9286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG480800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-32173231159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  Pavir.5NG480800.1.p 173 LDDGYRWRKYGQKAVKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 231
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33159231IPR003657WRKY domain
SuperFamilySSF1182901.7E-28166232IPR003657WRKY domain
PROSITE profilePS5081128.782168233IPR003657WRKY domain
SMARTSM007742.0E-38173232IPR003657WRKY domain
PfamPF031066.8E-26174231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MESLQGGDDE PHALPGFPYF SVPSPLAVLD APPTLSPDDN QHGALAALQQ ACNSLQQLPP  60
LLAPDQLAAA ATVAPPSMIL PPMVDWSSLL QQAGLMVGSP PVPGLHQQAA AVQQLDQSGE  120
NDCGEAAGSS GGTGTGKEKA RISGAGRSAS SSGMKKVSRP RFAFQTRSAN DILDDGYRWR  180
KYGQKAVKNS AHPRSYYRCT HHTCNVKKQV QRLAKDTSIV VTTYEGVHNH PCEKLMEALN  240
PILKQLQFLS QF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-24163230774Probable WRKY transcription factor 4
2lex_A4e-24163230774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG480800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282441e-123KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817428.11e-132WRKY transcription factor 23-like isoform X1
TrEMBLA0A2S3HRY61e-131A0A2S3HRY6_9POAL; Uncharacterized protein
TrEMBLA0A2T7DH511e-131A0A2T7DH51_9POAL; Uncharacterized protein
STRINGPavir.Eb03043.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.18e-57WRKY DNA-binding protein 24