PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG492700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 390aa    MW: 40395.3 Da    PI: 5.8059
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG492700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18269303135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Pavir.5NG492700.1.p 269 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 303
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-17263313IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-15263300IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.505263299IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-15265326No hitNo description
CDDcd002021.69E-14268315No hitNo description
PfamPF003207.8E-16269303IPR000679Zinc finger, GATA-type
PROSITE patternPS003440269294IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEAAAAAEYG YYGGGAAPRE RKPAGCGDHF VVDDLLVLPY DDDEEGDGEA APGDGEAPPC  60
LQAAGVKEEG GLGNFSADSS TVTALDSCGN SFSGLADGDF PREFCEPYDQ LAELEWLSNY  120
MGEGDDAFAT EDLQKLKLIS GGFSPAVNVP PAPVAPAAPA SAASAAQTGM FLPEAPVPAK  180
ARSKRSRVAP GNWSSRLLVL PPPPASPPSP ASMAIAPAES GVSAQAFAAK KPSKPSKKKD  240
GPPVPQAQPS SAPGAQPGGS AASAEGRRCL HCETDKTPQW RTGPLGPKTL CNACGVRYKS  300
GRLVPEYRPA ASPTFVMSKH SNSHRKVLEL RRQKEVQHQP PHVIAGGGPG GMMHMQSPLL  360
FDGPAAPPVI AGDDFLIHHH LGADYRQLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.227510.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG492700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969927.10.0GATA transcription factor 12
TrEMBLK3XIL30.0K3XIL3_SETIT; GATA transcription factor
STRINGPavir.Eb03102.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.19e-50GATA transcription factor 12