PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG496600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 429aa    MW: 47948.8 Da    PI: 5.4577
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG496600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind94.98.4e-301849101
                          HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
         HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                          ++++++++ ++ w+  g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F +g+++ l++i+
  Pavir.5NG496600.1.p   1 MVDNPATDAVVAWTPPGTSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKIDPEQ---------WEFANEDFIRGQRHRLKNIH 81 
                          899******************************************************9998.........******************** PP

                          XXX CS
         HSF_DNA-bind  99 rkk 101
                          r+k
  Pavir.5NG496600.1.p  82 RRK 84 
                          *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.3E-29183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.4E-47183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.1E-32183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.9E-27183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MVDNPATDAV VAWTPPGTSF VVANQAEFCR DLLPKYFKHN NFSSFVRQLN TYGFRKIDPE  60
QWEFANEDFI RGQRHRLKNI HRRKPIFSHS SHNQVSAPLA DHERREYEEE IEKLKCENAD  120
LISELEKNAE KKLDMERRMQ ELENKLISLE DRQKNLIAYV RDIVRAPGFR SSFVQQTDHH  180
GKKRRLLIPA SLHQDANTEG NQIVHGGLTN PPVYRESFDK MESSLNSLEN FFREASEAFD  240
ISYDDGVPGP SSAIVITELH SSGESDPVVP SPPSRMHTSS AGAGDSLSRM HTSSAGAGDS  300
LSSHDISGST SCAESPPLPQ MQSCTDSRAK VSEIDVNLEP AITETGPSRD QPAEDHPSLA  360
PANDGFWEQF LTEQPGSNAH QGVQSERRDG DSKDDRTRTG DQENLWRGKK NVEQMTEKLG  420
HLTSAEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2218336129Heat shock factor protein 1
5d5v_B1e-2218336129Heat shock factor protein 1
5d5v_D1e-2218336129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.259040.0callus| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG496600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4924600.0EU492460.1 Pennisetum glaucum heat shock transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816816.10.0heat stress transcription factor A-4b isoform X2
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A2T7DGU70.0A0A2T7DGU7_9POAL; Uncharacterized protein
STRINGPavir.Eb03132.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.17e-63heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]