PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG497000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 224aa MW: 25694.2 Da PI: 9.8965

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG497000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.6e-21	11	103	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA ++GFs+r+ +++k + ++ ++fv skeg r+e kkk ++k +r+ + r+gCka+++ k+++dgk+ev+++++ H Pavir.5NG497000.1.p 11 SFYKAYADHAGFSIRTWTQHKD--GDVVKLKKFVSSKEGWRKEGKKKeneqvDQKPERKIKIIRVGCKAMIEFKRQSDGKYEVSRFVKTH 98 5************9998887..888999********999997777666667788889*********************** PP FAR1 86 nHela 90 +Hela Pavir.5NG497000.1.p 99 THELA 103 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-18	11	103	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MIFDSWEQGK SFYKAYADHA GFSIRTWTQH KDGDVVKLKK FVSSKEGWRK EGKKKENEQV 60 DQKPERKIKI IRVGCKAMIE FKRQSDGKYE VSRFVKTHTH ELASPRRRHF LRSNREVSAE 120 LKSTLFSCHK VLIGTSATFR LLSVEEGGGG CENFGCTKHD LKNYDRDFKH AICHGDGQIL 180 IDMSILDAIS NLRDNFFSEH LQSRNFSDQS RMDGFVPLPA STK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG497000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190909.1	2e-68	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2T7EEH4	2e-73	A0A2T7EEH4_9POAL; Uncharacterized protein
STRING	Pavir.Db02183.1.p	4e-70	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-18	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.5NG497000.1.p