PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG500400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family VOZ
Protein Properties Length: 382aa    MW: 43152.4 Da    PI: 5.2673
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG500400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ425.96.3e-131822991217
                  VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 
                          p+psafl+pkcalwdc+rpa gse+++dycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip cegaataksp
  Pavir.5NG500400.1.p  82 PAPSAFLRPKCALWDCPRPAIGSERWHDYCSMYHADLAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGIPICEGAATAKSP 171
                          89*************************************9879*********************************************** PP

                  VOZ  90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinelda 179
                          wna+elfdl ++ege+irewlffdkprraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqps+s+ewhlyeyein++da
  Pavir.5NG500400.1.p 172 WNAPELFDLYIFEGESIREWLFFDKPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINDCDA 261
                          ****************************************************************************************** PP

                  VOZ 180 lalyrlelklvdekksakgkvskdsladlqkklgrlta 217
                          +alyrle+k++d+kksak+kv++++l+++q +++rl+a
  Pavir.5NG500400.1.p 262 FALYRLEFKSSDAKKSAKSKVACNPLNEIQLQMVRLSA 299
                          ************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MYYVNQELTV EDFLYDDDYK INLSGSNPDV LNNLEGIGQL EFPQFNFPQE LPPNVYLDMS  60
NCGQSTGDVF LHMSDLLTTM TPAPSAFLRP KCALWDCPRP AIGSERWHDY CSMYHADLAV  120
KEEGPPGTMP VIRPRGIDLK DGPLFAALSA KIQGKHVGIP ICEGAATAKS PWNAPELFDL  180
YIFEGESIRE WLFFDKPRRA FDSGNRKQRS LPDYNGRGWH ESRKQVMKDF GGLKRSYYMD  240
PQPSNSYEWH LYEYEINDCD AFALYRLEFK SSDAKKSAKS KVACNPLNEI QLQMVRLSAD  300
SPVDTKRTAR GRTKANPIDI STNIYSVPNT TVQANVPNAY QPVSQVDQMT YLNGSVVYGP  360
HLPHGYSAER SDFYWNSNDG T*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG500400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424030.0BT042403.1 Zea mays full-length cDNA clone ZM_BFb0220N09 mRNA, complete cds.
GenBankEU9710470.0EU971047.1 Zea mays clone 356506 vascular plant one zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818470.10.0transcription factor VOZ1-like
SwissprotQ9SGQ01e-123VOZ1_ARATH; Transcription factor VOZ1
TrEMBLA0A3L6SN530.0A0A3L6SN53_PANMI; Transcription factor VOZ1
STRINGPavir.Eb03152.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23433888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-120vascular plant one zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yasui Y,Kohchi T
    VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
    [PMID:25351333]
  3. Kumar S,Choudhary P,Gupta M,Nath U
    VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
    Plant Physiol., 2018. 176(4): p. 2917-2930
    [PMID:29507119]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]