PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG502800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 731aa    MW: 83457.7 Da    PI: 7.7559
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG502800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1705.5e-221799190
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                         ++Yn+YA  vGFsvrks++k++k +++  ++ fvCs +g r++e ++       +  trtgC+a+++ + +k+++w v+k++ eHnH la
  Pavir.5NG502800.1.p 17 EMYNTYAGLVGFSVRKSRTKRRKSDDSLSQKYFVCSGQGLRKNEASQ-------KDITRTGCDARVQFSISKENVWTVQKIVVEHNHYLA 99
                         58***************************************998766.......99*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-181799IPR004330FAR1 DNA binding domain
PfamPF105511.1E-21193262IPR018289MULE transposase domain
PROSITE profilePS5096610.113464500IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-6466497IPR007527Zinc finger, SWIM-type
SMARTSM005758.3E-7475502IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MAPKVGMTFD CEKKVYEMYN TYAGLVGFSV RKSRTKRRKS DDSLSQKYFV CSGQGLRKNE  60
ASQKDITRTG CDARVQFSIS KENVWTVQKI VVEHNHYLAS PNKIHKLMSQ REIIEADRKL  120
IGQARRSGMK PSQVFNFMKE HYGGEDKVPF TKMDCYNEIG RERRQYLEGN DAQTLSEYLR  180
NKQAQDPTFF YAVEQTIIFG CALMFNETIP SFVWLFESFL QAMSGKHPST IFTDQDAAMA  240
AAIAHVFPNT AHRLCLWHIG QNAVKHLGPI IKAAEDKAED EAEDKSGNKF NKFWADFKSY  300
IYEDRAEIYF TEKWDELLAK YNLEDNTWMS NLYALRAKWA AVYRDSFTAD MHSTQRSEGM  360
NNVFKKTFRR KLSLSELLVE CENVIVTLRS NEKDADFQSR RKIPDCYIPN LPMLKTAAET  420
YTRRMYSDFE EEFKKQFTLS CELLEGNGTN STFFVKYMQS ERGATVVLNK EDSTITCSCR  480
MFECIGLLCK HALRVYNMNG VYNLSSQYIL PRWTKYAKSG FYIETKQESE EGDLNAQATL  540
ISRQATSLAL KCSSSKELLD KIQKALQDLN LEADTYLSEM HDKSNEISPT PNECVRDPLN  600
GVISFRIPPV IKGPNETRFK NVLEKNPGKK KKGAQKKGDD LEHDDIEARD ERAETNQIID  660
CNVGASSTMN APFIQGGYTN VAMPPFNLFA NPSAMAPPYI PGRYTSLLMG VDQDATTQAA  720
VRKLHFDESM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG502800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438310.20.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021305877.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021305880.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLB9F9E30.0B9F9E3_ORYSJ; Uncharacterized protein
STRINGSb06g016820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-87FAR1-related sequence 5