PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG507300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 220aa    MW: 24047.4 Da    PI: 10.0586
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG507300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.24.9e-2289144156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r++ +++t+eq++++e++F+++++p++++r++L+++lgL+ rqVk+WFqNrR++ k
  Pavir.5NG507300.1.p  89 RKSYHRHTAEQIKAMEAVFKESPHPDEQQRQQLSQELGLSARQVKFWFQNRRTQIK 144
                          788999**********************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-2475140IPR009057Homeodomain-like
SuperFamilySSF466894.18E-2176147IPR009057Homeodomain-like
PROSITE profilePS5007118.23686146IPR001356Homeobox domain
SMARTSM003892.4E-1988150IPR001356Homeobox domain
PfamPF000461.7E-1989144IPR001356Homeobox domain
CDDcd000861.15E-1789147No hitNo description
PRINTSPR000311.9E-5117126IPR000047Helix-turn-helix motif
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5126142IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGSRSRPTPR TQDFFPAPAL SLSLAGGFGR DEPAASGGEE VDADDEGGIR LRPGEAAEMS  60
SENTAAGSQS GGEDAAGHGD DGRRDNKRRK SYHRHTAEQI KAMEAVFKES PHPDEQQRQQ  120
LSQELGLSAR QVKFWFQNRR TQIKATQERH ENALLKSELE KLQGENRAMR ELAKKSPRCS  180
GCGAGRRRRE HGRAAAPAGE HRAQSRGREA ARDPGNPRC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG507300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701492.13e-96homeobox-leucine zipper protein ROC9
SwissprotQ5JMF33e-64ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A2T8IK621e-103A0A2T8IK62_9POAL; Uncharacterized protein
STRINGPavir.Ea02783.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15929915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.27e-42HD-ZIP family protein