PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG545900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 359aa    MW: 38221.4 Da    PI: 6.1291
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG545900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY635.1e-20114173259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SS.STTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversae.dpkvveitYegeHnhe 59 
                           Dgy+WrKYGqK++++ +f+r Y++C  + +C++kkkv++++   p ++++tY +eH+++
  Pavir.5NG545900.1.p 114 TDGYQWRKYGQKKIQNCNFSRYYFKCNRHrRCEAKKKVQQQDGgGPPMFDVTYVNEHTCD 173
                          7*************************9888*********99852679***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-2399174IPR003657WRKY domain
SuperFamilySSF1182904.97E-20108173IPR003657WRKY domain
SMARTSM007743.3E-25113174IPR003657WRKY domain
PROSITE profilePS5081113.701114175IPR003657WRKY domain
PfamPF031069.9E-22115173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAYDPDAKLS DVLAGGYDIN NRLQALLSRP LDSRGQEAAM AFSQELSRVF LVSLSMLNGN  60
SVAPEVRTGN SSGVSTPAKD KRARSDNGEV VTPTKKSREE GLIIRKEITP SPHTDGYQWR  120
KYGQKKIQNC NFSRYYFKCN RHRRCEAKKK VQQQDGGGPP MFDVTYVNEH TCDELRASDD  180
AAASRMASPW TTSRHHAGAV DTARGGDGGG LSGLLPHIIA GSGGGGSAEE NEAMVSCLAT  240
VISGSVPPSS SGWPPAPEAS ASDPAAFVLP GPAARSASVD GSVAADDGAA AAATMMMADD  300
TGFSWDPWWS MCPGEEAARH QLVIMNPNHH RDDMHMDDAG GFADTVWPEH TCGAWRRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG545900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972234.11e-149WRKY transcription factor WRKY62
TrEMBLA0A3L6SIS70.0A0A3L6SIS7_PANMI; Uncharacterized protein
STRINGPavir.Ea03256.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-15WRKY DNA-binding protein 70