PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG546000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 314aa    MW: 33329.5 Da    PI: 5.4009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG546000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.65.2e-18124185259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                           Dgy+WrKYGqK ++++++pr YYrC+++   gC+++k+v++++  d+    ++Y  +H+++
  Pavir.5NG546000.1.p 124 YDGYQWRKYGQKRITKTHYPRCYYRCSFHrerGCRATKQVQQCSgGDQPQYLVIYFYDHTCD 185
                          59*************************998999*******9887257778889999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-22109186IPR003657WRKY domain
SuperFamilySSF1182901.44E-19118186IPR003657WRKY domain
SMARTSM007742.4E-28123186IPR003657WRKY domain
PROSITE profilePS5081116.409125187IPR003657WRKY domain
PfamPF031066.2E-20125185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQAQSRLGVS GGGMSSASDA ELEAVIRELT RGRQLTARLR AEALRVLRGQ GQAEATAALI  60
LQEVSRAFTV CLNIMGSPAG APPPPEMPGL AAAAAAPPFL LAPPRRNRED SIPRVQTVTP  120
SPHYDGYQWR KYGQKRITKT HYPRCYYRCS FHRERGCRAT KQVQQCSGGD QPQYLVIYFY  180
DHTCDTAAWE PEAPANRPAA TVRRLDLPGA ALLDERGVQE EQVLVSTLAC VLGGQQQFHQ  240
APPAPDAAAT SAAIAVNEDP APVVDAAAGM PRLDVDGVGL DVMDYEDVAG ELCFGDGDSY  300
GLPGSGGGGG LPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG546000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638616e-66BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBankEU9564876e-66EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
GenBankJX4699486e-66JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818129.11e-153probable WRKY transcription factor 64
TrEMBLA0A3L6R2X71e-156A0A3L6R2X7_PANMI; Putative WRKY transcription factor 4
STRINGPavir.Eb03562.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.25e-16WRKY family protein