PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG546100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 293aa    MW: 31385.1 Da    PI: 6.2788
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG546100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.55.6e-23108166359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg+ WrKYGqK+++g ++pr YYrC+++  gC+++++v+r++++p + ei Y geH+++
  Pavir.5NG546100.1.p 108 DGFIWRKYGQKDINGHKHPRLYYRCAHRqqGCNATRRVQRTRDQPAAYEIAYYGEHTCR 166
                          9**************************9999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-2497166IPR003657WRKY domain
SuperFamilySSF1182906.28E-22101166IPR003657WRKY domain
SMARTSM007742.7E-28106167IPR003657WRKY domain
PROSITE profilePS5081119.761108163IPR003657WRKY domain
PfamPF031064.4E-24108166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTLDTPAAVV LELMTMGQQS AAHLGDLLRA ASPASPPQEL AAEILRCCGR VIDMIRATSA  60
GRKRKAAEYQ APALGAWSPP PPPGPPPKRR GRGAEAVKEV VTSCTTVDGF IWRKYGQKDI  120
NGHKHPRLYY RCAHRQQGCN ATRRVQRTRD QPAAYEIAYY GEHTCRGAAA CQQHGAAPPP  180
AVVDFGSNSL GSDDAGRGSP AASMSQGQQG GWSPPSVSAS PSSEVELELE GAHAHEWEWH  240
DPATIDELIG ATPYYGSDPV TEFLDGCLGW EAVLNENDPL DLPGLHHFAM FQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-191081661069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG546100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586300.0KU058630.1 UNVERIFIED: Panicum miliaceum WRKY21-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817680.11e-169probable WRKY transcription factor 66
TrEMBLA0A2S3HQI11e-168A0A2S3HQI1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DF511e-168A0A2T7DF51_9POAL; Uncharacterized protein
STRINGPavir.Eb03563.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-21WRKY DNA-binding protein 46