PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG559400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WOX

Protein Properties

Length: 269aa MW: 30177.6 Da PI: 6.5116

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG559400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.3	2e-21	90	150	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Pavir.5NG559400.1.p 90 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 150 89***************99************************************97 PP
2	Wus_type_Homeobox	101.3	6.9e-33	89	152	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Pavir.5NG559400.1.p 89 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 152 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-17	85	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	86	151	IPR001356	Homeobox domain
SMART	SM00389	2.7E-14	88	155	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-18	89	154	IPR009057	Homeodomain-like
Pfam	PF00046	3.3E-19	90	150	IPR001356	Homeobox domain
CDD	cd00086	1.97E-14	90	152	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEWGDRAKAA AAADERAGGG EGLGGYVKVM TDEQMEVLRK QISIYATICE QLVEMHRTLT 60 EHQDSIAGMR FSNLYCDPLI IPGGHKITAR QRWQPTPMQL QILENIFDQG NGTPSKQKIK 120 EITAELSHHG QISETNVYNW FQNRRARSKR KQAAALPNNN TESEAEVDEE ALTDKKPKSD 180 RLLHENKAMS VHTERISGMH HFDADHDQIG GMMYGSSENS MRSSGNSGHM SFYENIMSNP 240 RIDHFPGKVE SSRSFSHLQH GEGFDMFG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.8205	0.0	callus\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG559400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063919	0.0	BT063919.1 Zea mays full-length cDNA clone ZM_BFc0120C21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815130.1	0.0	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-134	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2T7DF58	0.0	A0A2T7DF58_9POAL; Uncharacterized protein
STRING	Pavir.Eb03552.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-61	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Pavir.5NG559400.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]